Review on Physiome.jp
  • Toward integration of biological and physiological functions at multiple levels
    Taishin Nomura, Frontiers in Systems Physiology, Vol. 1, Article 164, 2010
    [PDF]
insilicoML
  • Specifications of insilicoML 1.0: A Multilevel Biophysical Model Description Language
    Asai et al., J. Physiol. Sci. Vol. 58, No. 7; Dec. 2008; pp. 447-45
    [PDF]
  • What's insilicoML(ver0.1alpha)
    Yoshiyuki Asai
    [PDF / HTML]
insilicoIDE
  • Finite Element Method Analysis in insilicoIDE
    Oka et al., Proceeding of The 50th Annual Conference of Japanese Society for Medical and Biological Engineering
    [PDF]
  • Harnessing Biological Complexity
    Nomura Taishin, Asai Yoshiyuki, Springer, ISBN: 978-4-431-53879-0
     Physiome Project
    [Details (springer.com)]
  • A Platform for in silico Modeling of Physiological Systems III.
    Suzuki et al., IEEE-EMBS 2009 Conference Proceedings Reprint
    [PDF]
  • Optimization Techniques for Parallel Biophysical Simulations Generated by insilicoIDE
    Eric M. Heien and Yoshiyuki Asai and Taishin Nomura and Kenichi Hagihara, IPSJ Online Transactions
    [PDF / BibTeX]

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  • A Platform for in silico Modeling of Physiological Systems II. CellML Compatibility and Other Extended Capabilities
    Suzuki et al., IEEE-EMBS 2008 Conference Proceedings Reprint
    [PDF]
  • A Platform for in silico Modeling of Physiological Systems II. CellML Compatibility and Other Extended Capabilities
    Suzuki et al., IEEE-EMBS 2008 Conference Poster
    [PDF]
  • CellML-Compatible Integrated Development Environment for MultilevelModeling of Biophysical Functions
    Yoshiyuki Asai, 2nd CellML Workshop (26 March, 2008 at Auckland) PPT slides
    [PDF]
  • A Platform for in silico Modeling of Physiological Systems
    Kawazu et al., IEEE-EMBS 2007 Conference Proceedings Reprint
    [PDF]
Symposium
  • The 4th Global COE International Symposium on Physiome and Systems Biology
    for Integrated Life Sciences and Predictive Medicine (21th November 2011 - 23th November 2011)

    International Symposium Series for 80th Anniversary of Osaka University
    Final Symposium of GCOE in silico medicine
    [Photo Collection...]
  • SBML and ISML Joint Winter School (14th December 2009 - 18th December 2009)
    "Winter School on Computational Modeling in Biology -Data and model sharing by SBML and insilicoML-"
    [Presentation Slides... / Photo Collection...]
  • The 3rd MEI international symposium (30th Nov 2008 - 2nd Dec 2008)
    "Physiome and Systems Biology for Integrated Life Sciences and Predictive Medicine"
    [Presentation Slides...]
Survey
  • A Questionnaire Survey on the Model Sharing in the Fields of Biosciences and Bioengineering in Japan
    Performed by Physiome and Systems Biology Initiative Japan
    [PDF]